PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_014805-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

WRKY

Protein Properties

Length: 158aa MW: 18968.8 Da PI: 10.1243

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_014805-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.7	1e-32	81	139	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ NNU_014805-RA 81 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHIHS 139 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.6E-34	66	139	IPR003657	WRKY domain
SuperFamily	SSF118290	6.41E-29	73	140	IPR003657	WRKY domain
PROSITE profile	PS50811	29.471	76	141	IPR003657	WRKY domain
SMART	SM00774	6.1E-37	81	140	IPR003657	WRKY domain
Pfam	PF03106	1.4E-25	82	138	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1901141	Biological Process	regulation of lignin biosynthetic process
GO:1904369	Biological Process	positive regulation of sclerenchyma cell differentiation
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MQKYQEIALS LSLSLQFSHL LVWFWLELRP WVQDSERLSG KRYGEDEHMG VSAMKMKKVK 60 ARRKVREPRF CFKTMSDVDV LDDGYKWRKY GQKVVKNTQH PRSYYRCTQD NCRVKKRVER 120 LAEDPRMVIT TYEGRHIHSP SHDLDNSQAP PQISNFFW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-28	72	138	8	74	Probable WRKY transcription factor 4
2lex_A	9e-28	72	138	8	74	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB379894	2e-67	AB379894.1 Nelumbo nucifera DNA, microsatellite locus NS090.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010268590.1	2e-95	PREDICTED: probable WRKY transcription factor 13
Swissprot	Q9SVB7	2e-62	WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBL	A0A061DJ42	9e-82	A0A061DJ42_THECC; WRKY DNA-binding protein 13
STRING	VIT_07s0031g01840.t01	1e-79	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	9e-54	WRKY DNA-binding protein 13