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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_014805-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | WRKY | ||||||||
Protein Properties | Length: 158aa MW: 18968.8 Da PI: 10.1243 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.7 | 1e-32 | 81 | 139 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ NNU_014805-RA 81 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHIHS 139 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.6E-34 | 66 | 139 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-29 | 73 | 140 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.471 | 76 | 141 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.1E-37 | 81 | 140 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-25 | 82 | 138 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MQKYQEIALS LSLSLQFSHL LVWFWLELRP WVQDSERLSG KRYGEDEHMG VSAMKMKKVK 60 ARRKVREPRF CFKTMSDVDV LDDGYKWRKY GQKVVKNTQH PRSYYRCTQD NCRVKKRVER 120 LAEDPRMVIT TYEGRHIHSP SHDLDNSQAP PQISNFFW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-28 | 72 | 138 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 9e-28 | 72 | 138 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB379894 | 2e-67 | AB379894.1 Nelumbo nucifera DNA, microsatellite locus NS090. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010268590.1 | 2e-95 | PREDICTED: probable WRKY transcription factor 13 | ||||
Swissprot | Q9SVB7 | 2e-62 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | A0A061DJ42 | 9e-82 | A0A061DJ42_THECC; WRKY DNA-binding protein 13 | ||||
STRING | VIT_07s0031g01840.t01 | 1e-79 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 9e-54 | WRKY DNA-binding protein 13 |